KEY PUBLICATIONS

  • Yoo, J., Dombrovski, M., Mirshahidi, P., Nern, A., LoCascio, S. A., Zipursky, S. L.*, Kurmangaliyev, Y. Z.* (2023) Brain wiring determinants uncovered by integrating connectomes and transcriptomes. Current Biology, 33, 1-8. doi: 10.1016/j.cub.2023.08.020

  • Jain, S.*, Lin, Y.*, Kurmangaliyev, Y. Z., Valdes-Aleman J., LoCascio, S. A., Mirshahidi, P., Parrington, B., Zipursky, S. L. (2022) A global timing mechanism regulates cell-type specific wiring programmes. Nature, 603, 112-118. doi: 10.1038/s41586-022-04418-5

  • Kurmangaliyev, Y. Z., Yoo, J., Valdes-Aleman, J., Sanfilippo, P., Zipursky, S. L. (2020) Transcriptional Programs of Circuit Assembly in the Drosophila Visual System. Neuron, 108, 1–13. doi: 10.1016/j.neuron.2020.10.006

  • Kurmangaliyev, Y.Z.*, Yoo, J.*, LoCascio, S. A.*, Zipursky, S. L. (2019). Modular transcriptional programs separately define axon and dendrite connectivity. eLife, 8, e50822. doi: 10.7554/eLife.50822

PREPRINTS

  • Dombrovski, M., Zang, Y., Frighetto, F., Vaccari, A., Jang, H., Mirshahidi, P.S., Xie, F., Sanfilippo, P., Hina, B.W., Rehan, A., Hussein, R.H., Mirshahidi, P.S., Lee, C., Frye, M.A., von Reyn, C.R., Kurmangaliyev, Y.Z., Card, G.M., Zipursky, S.L. (2024) Gradients of Recognition Molecules Shape Synaptic Specificity of a Visuomotor Transformation. bioRxiv, doe: 10.1101/2024.09.04.610846.

  • Smolin, N., Dombrovski, M., Hina, B. W., Moreno-Sanchez, A., Gossart, R., Carmona, C. R., Rehan, A., Hussein, R. H., Mirshahidi, P., Ausborn, J., Kurmangaliyev, Y. Z.*, von Reyn, C. R.* (2024). Neuronal identity control at the resolution of a single transcription factor isoform. bioRxiv, doi: 10.1101/2024.06.14.598883.

  • Thornton-Kolbe, E. M., Ahmed, M., Gordon, F. R., Sieriebriennikov, B., Williams, D. L., Kurmangaliyev, Y. Z., Clowney, E. J. Spatial constraints and cell surface molecule depletion structure a randomly connected learning circuit. bioRxiv, doi: 10.1101/2024.07.17.603956.

  • McFarland, B. W., Jang, H., Smolin, N., Hina, D.W., Parisi, M.J., Davis, K.C., Mosca, T.J., Godenschwege, T.A., Nern, A., Kurmangaliyev, Y. Z., von Reyn, C. R. Axon arrival times and physical occupancy establish visual projection neuron integration on developing dendrites in the Drosophila optic glomeruli. bioRxiv, doi: 10.1101/2022.08.20.504653.

OTHER PUBLICATIONS

  • Azbazdar, Y., Sosa, E. A., Monka, J., Kurmangaliyev, Y. Z., & Tejeda-Muñoz, N. (2024). Interactions between genistein and Wnt pathway in colon adenocarcinoma and early embryos. Heliyon, 10, e32243.

  • Tejeda-Muñoz, N., Azbazdar, Y., Sosa, E. A., Monka, J., Wei, P. S., Binder, G., Mei, K. C., Kurmangaliyev, Y. Z., & De Robertis, E. M. (2024). Na,K-ATPase activity promotes macropinocytosis in colon cancer via Wnt signaling. Biology open, 13, bio060269.

  • Dombrovski, M., Peek, M. Y., Park, J. Y., Vaccari, A., Sumathipala, M., Morrow, C., Breads, P., Zhao, A., Kurmangaliyev, Y. Z., Sanfilippo, P., Rehan, A., Polsky, J., Alghailani, S., Tenshaw, E., Namiki, S., Zipursky, S. L., Card, G. M. (2023). Synaptic gradients transform object location to action. Nature, 613, 534–542.

  • Stearns-Reider, K. M., Hicks M. R., Hammond, K. G., Reynolds, J., Maity, A., Kurmangaliyev, Y. Z., Chin, J., Stieg, A., Geisse, N. A., Hohlbauch, S., Kaemmer, S., Schmitt, L. R., Pham, T. T., Yamauchi, K., Novitch, B. G., Wollman, R., Hansen, K. C., Pyle, A. D., Crosbie, R. H. (2023) Myoscaffolds reveal laminin scarring is detrimental for stem cell function while sarcospan induces compensatory fibrosis. NPJ Regenerative Medicine, 8, 16.

  • McCourt, J. L, Stearns-Reider, K. M., Mamsa, H., Kannan, P., Afsharinia, M. H., Shu, C., Gibbs, E. M., Shin, K. M., Kurmangaliyev, Y. Z., Schmitt, L. R., Hansen, K. C., Crosbie, R. H. (2023) Multi-omics analysis of sarcospan overexpression in mdx skeletal muscle reveals compensatory remodeling of cytoskeleton-matrix interactions that promote mechanotransduction pathways. Skeletal Muscle, 13, 1.

  • Yokota, T., McCourt, J., Ma, F., Ren, S., Li, S., Kim, T. H., Kurmangaliyev, Y. Z., Nasiri, R., Ahadian, S., Nguyen, T., Tan, X., Zhou, Y., Wu, R., Rodriguez, A., Cohn, W., Wang, Y., Whitelegge, J., Ryazantsev, S., Khademhosseini, A., Teitell, M. A., Chiou, P.-Y., Birk, D. E., Rowat, A. C., Crosbie, R.-H., Pellegrini, M., Seldin, M., Lusis, A. J., Deb, A. (2020). Type V Collagen in Scar Tissue Regulates the Size of Scar after Heart Injury. Cell, 182, 545–562.

  • Romero, Z., Lomova, A., Said, S., Miggelbrink, A., Kuo, C. Y., Campo-Fernandez, B., Hoban, M. D., Masiuk, K. E., Clark, D. N., Long, J., Sanchez, J. M., Velez, M., Miyahira, E., Zhang, R., Brown, D., Wang, X., Kurmangaliyev, Y. Z., Hollis, R. P., Kohn, D. B. (2019). Editing the Sickle Cell Disease Mutation in Human Hematopoietic Stem Cells: Comparison of Endonucleases and Homologous Donor Templates. Molecular therapy, 27, 1389–1406.

  • Sarin, S.*, Zuniga-Sanchez, E.*, Kurmangaliyev, Y. Z., Cousins, H., Patel, M., Hernandez, J., Zhang, K. X., Samuel, M. A., Morey, M., Sanes, J. R., Zipursky, S. L. (2018) Role for Wnt Signaling in Retinal Neuropil Development: Analysis via RNA-Seq and In Vivo Somatic CRISPR Mutagenesis. Neuron, 98, 109–126.

  • Kurmangaliyev, Y. Z., Ali, S., Nuzhdin S. V. (2016) Genetic Determinants of RNA Editing Levels of ADAR Targets in Drosophila melanogaster. G3 (Bethesda), 6, 391–396.

  • Kurmangaliyev, Y. Z., Favorov, A.V., Osman, N. M., Lehmann, K. V., Campo, D., Salomon, M. P., Tower, J., Gelfand, M. S., Nuzhdin, S. V. (2015) Natural variation of gene models in Drosophila melanogaster. BMC   Genomics, 16, 198.

  • Kurmangaliyev, Y. Z., Sutormin, R. A., Naumenko, S. A., Bazykin, G. A., Gelfand, M. S. (2013) Functional implications of splicing polymorphisms in the human genome. Human Molecular Genetics, 22, 3449–3459.

  • Kurmangaliyev, Y. Z., Goland, A., Gelfand, M. S. (2011) Evolutionary patterns of phosphorylated serines. Biology Direct, 6, 8.

  • Kurmangaliev, E. Zh., Gel'fand, M. S. (2009) Alternative splicing tends to involve phosphorylation sites. Molecular Biology (Moscow), 43, 572–574.

  • Kurmangaliyev, Y. Z., Gelfand, M. S. (2008) Computational analysis of splicing errors and mutations in human transcripts. BMC Genomics, 9, 13.

  • Deev, I. E., Vasilenko, K. P., Kurmangaliev, E. Zh., Serova, O. V., Popova, N. V., Galagan, Y. S., Burova, E. B., Zozulya, S. A., Nikol'skii, N. N., Petrenko, A. G. (2006) Effect of changes in ambient pH on phosphorylation of cellular proteins. Dokl Biochem Biophys, 408, 184–187.